Changes between Version 44 and Version 45 of Jupyter

Timestamp:

05/22/18 10:44:46 (6 years ago)

Author:

Jens Henrik Goebbert

Comment:

--

Jupyter

@@ -77 +77 @@
 ==== Setup your own specialized Jupyter-Kernel
 The installed kernels might not suite your needs and you want to switch to a different software stage or want to load additional software modules. \\In that case you need to set up your own specialized Jupyter kernel (located in ''${HOME}/.local/share/jupyter/kernels/'').\\ This can be done in the terminal in a few steps on the supercomputer:
-* LOAD the modules you need 
+1. LOAD the modules you need 
   * start with ''module --force purge'' to remove any module which is already loaded
   * ensure this includes a recent Python 3.x (even if you are not planing to use Python)
@@ -88 +88 @@
 }}}
 
-* CREATE a new Python virtual environment on the supercomputer
+2. CREATE a new Python virtual environment (VENV) on the supercomputer
   * e.g. in ''$HOME/venv_mykernel/''
   * more: https://docs.python.org/3/library/venv.html
@@ -97 +97 @@
 }}}
 
-* ACTIVATE the new Python virtual environment (VENV) in your terminal
+3. ACTIVATE the new Python virtual environment (VENV) in your terminal
   * the loaded modules modify $PYTHONPATH (''python -m site'')
     * ensure(!!!) the first entry is the ''site-package'' directory of your VENV
@@ -107 +107 @@
 }}}
 
-* PIMP your VENV
+4. PIMP your VENV
   * install ipykernel with ''pip''
   * install any other python software you need with ''pip''
@@ -116 +116 @@
 }}}
 
-* INSTALL your personal Jupyter kernel
+5. INSTALL your personal Jupyter kernel
   * location of the new Jupyter kernel: ''${HOME}/.local/share/jupyter/kernels/mykernel/''
   * more: http://ipython.readthedocs.io/en/stable/install/kernel_install.html
@@ -126 +126 @@
 Now, modify this basic jupyter kernel to suite your needs.
 
-* WRITE a launch script
+6. WRITE a launch script
   * that sets up your environment
     * load the same modules as in (1)
   * followed by the IPython kernel launch
-    * load the Python virtual environment as in (2)
+    * load the Python virtual environment as in (3)
   * example (e.g. ${HOME}/venv_mykernel/mykernel.sh):
 {{{ #!ShellExample
@@ -146 +146 @@
 }}}
 
-* MODIFY the Jupyter kernel configuration file
+7. MODIFY the Jupyter kernel configuration file
   * located in ${HOME}/.local/share/jupyter/kernels/mykernel/kernel.json file
   * it must call your launch script: