1 | !**************************************************************
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2 | !
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3 | ! This file contains the subroutines: partem_p
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4 | ! USE WITH main_p, NOT WITH main!!!!!!
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5 | !
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6 | ! Copyright 2003-2005 Frank Eisenmenger, U.H.E. Hansmann,
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7 | ! Shura Hayryan, Chin-Ku
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8 | ! Copyright 2007 Frank Eisenmenger, U.H.E. Hansmann,
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9 | ! Jan H. Meinke, Sandipan Mohanty
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10 | !
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11 | ! **************************************************************
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12 |
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13 | !>
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14 | !! PURPOSE: SIMULATION OF PROTEINS BY PARALLEL TEMPERING ALGORITHM
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15 | !! ON PARALLEL COMPUTERS USING MPI
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16 | !!
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17 | !! switch: Choses the starting configuration:
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18 | !! -1 - stretched configuration
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19 | !! 0 - don't change anything
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20 | !! 1 - random start configuration
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21 | !!
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22 | !! CALLS: addang,contacts,energy,hbond,helix,iendst,metropolis,
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23 | !! outvar,(rand),rgyr
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24 | !<
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25 | subroutine partem_p(num_rep, nequi, nswp, nmes, nsave, newsta,
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26 | & switch, rep_id, partem_comm)
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27 | include 'INCL.H'
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28 | include 'INCP.H'
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29 | include 'mpif.h'
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30 |
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31 | logical newsta
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32 | integer switch, partem_comm, rep_id, nsave
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33 | ! external rand
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34 | external can_weight
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35 |
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36 | ! nequi: number of Monte Carlo sweeps for thermalization
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37 | ! nswp: number of Monte Carlo sweeps
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38 | ! nmes: number of Monte Carlo sweeps between measurments
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39 | ! newsta: .true. for new simulations, .false. for re-start
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40 | double precision temp, eavm, sph, geavm, gsph, dv, grnd, vr
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41 | double precision addang, dummy, eol, energy, acz, rmsv, rmsdfun
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42 | double precision rgy, ee, tmhb, dham, swp, wij, rd, e_final
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43 |
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44 | integer ifrrm, nmes, nswp, num_rep, i, j, nresi, iold, inode
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45 | integer intem, iv, jold, idum1, idum2, idum3
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46 | integer ierr, nsw, nequi
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47 | integer nml, nhel, mhel, nbet, mbet, mhb, imhb, nctot, ncnat
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48 | integer k1, k, nu, no1, in, jn
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49 |
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50 | dimension eavm(MAX_PROC),sph(MAX_PROC),intem(MAX_PROC),
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51 | & inode(MAX_PROC), geavm(MAX_PROC), gsph(MAX_PROC)
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52 | double precision pbe(MAX_PROC),yol(MAX_PROC),acy(MAX_PROC),
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53 | & acy1(MAX_PROC),acx1(MAX_PROC),
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54 | & rgyrp(MAX_PROC),rmsdp(MAX_PROC), eol0,acz0
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55 |
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56 | double precision e_min, e_minp(MAX_PROC), e_minpt(MAX_PROC)
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57 | integer h_max, h_maxp(MAX_PROC)
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58 | ! Order of replica exchange
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59 | integer odd
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60 | ! Counter to keep random number generators in sync
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61 | integer randomCount
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62 |
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63 | ! Collect partial energies. Only the root writes to disk. We have to
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64 | ! collect the information from the different replicas and provide
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65 | ! arrays to store them.
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66 | ! eyslr storage array for solvent energy
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67 | ! eyelp - " - coulomb energy
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68 | ! eyvwp - " - van-der-Waals energy
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69 | ! eyhbp - " - hydrogen bonding energy
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70 | ! eysmi - " - intermolecular interaction energy
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71 | ! eyabp - " - Abagyan correction term
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72 | double precision eyslr(MAX_PROC)
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73 | double precision eyelp(MAX_PROC),eyvwp(MAX_PROC),eyhbp(MAX_PROC),
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74 | & eyvrp(MAX_PROC),eysmip(MAX_PROC), eyabp(MAX_PROC)
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75 | ! Collect information about accessible surface and van-der-Waals volume
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76 | ! asap storage array for solvent accessible surface
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77 | ! vdvolp storage array for van-der-Waals volume
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78 | double precision asa_p(MAX_PROC), vdvolp(MAX_PROC)
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79 |
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80 | integer nhelp(MAX_PROC),nbetp(MAX_PROC), mhbp(MAX_PROC),
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81 | & ncnatp(MAX_PROC),nctotp(MAX_PROC)
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82 | integer imhbp(MAX_PROC)
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83 | character*80 filebase, fileNameMP, tbase0,tbase1
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84 | ! frame frame number for writing configurations
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85 | ! trackID configuration that should be tracked and written out
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86 | ! dir direction in random walk
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87 | ! -1 - visited highest temperature last
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88 | ! 1 - visited lowest temperature last
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89 | ! 0 - haven't visited the boundaries yet.
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90 | ! dirp storage array for directions.
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91 | integer frame, trackID, dir
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92 | integer dirp(MAX_PROC)
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93 |
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94 | frame = ifrrm
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95 | trackID = 1
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96 | odd = 1
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97 | write (logString, *) 'Starting parallel tempering.'
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98 | write (logString, *) 'parameters, ',switch,newsta,nmes,nswp,nmes,
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99 | & rep_id, num_rep, partem_comm, myrank
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100 | call flush(6)
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101 | !
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102 | !
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103 | ! File with temperatures
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104 | open(11,file='temperatures',status='old')
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105 | ! File with reference conformation
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106 | tbase0='trj_00000'
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107 | open(18,file=fileNameMP(tbase0,5,9,rep_id),status='unknown')
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108 | if (rep_id.eq.0.and.myrank.eq.0) then
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109 | ! File with time series of simulation
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110 | open(14,file='ts.d',status='unknown')
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111 | ! Track weights
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112 | ! open(16, file='weights.dat', status='unknown')
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113 | endif
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114 |
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115 | ! READ IN TEMPERATURES
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116 | do i=1,num_rep
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117 | read(11,*) j,temp
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118 | pbe(j) = 1.0d0/( temp * 1.98773d-3 )
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119 | end do
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120 | close(11)
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121 |
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122 | ! nresi: number of residues
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123 | nresi=irsml2(1)-irsml1(1)+1
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124 | !
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125 | ! Initialize variables
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126 | do i=1,num_rep
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127 | acx1(i) = 0.0d0
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128 | acy(i) = 0.0d0
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129 | eavm(i) = 0.0d0
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130 | sph(i) = 0.0d0
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131 | geavm(i) =0.0d0
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132 | gsph(i) = 0.0d0
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133 | e_minp(i) = 1.0d15
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134 | h_maxp(i) = 0
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135 | dirp(i) = 0
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136 | end do
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137 | dirp(1) = 1
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138 | dirp(num_rep) = -1
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139 | e_min = 1.0d15
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140 | h_max = 0
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141 | dir = dirp(rep_id + 1)
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142 |
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143 | ! _________________________________ Initialize Variables
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144 | if(newsta) then
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145 | iold=0
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146 | do i=1,num_rep
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147 | inode(i) = i
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148 | intem(i) = i
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149 | end do
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150 | ! _________________________________ initialize starting configuration
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151 | if (switch.ne.0) then
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152 | do i=1,nvr
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153 | iv=idvr(i) ! provides index of non-fixed variable
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154 | if (switch.gt.0) then
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155 | dv=axvr(i)*(grnd()-0.5)
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156 | vr=addang(pi,dv)
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157 | else
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158 | vr = pi
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159 | endif
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160 | vlvr(iv)=vr
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161 | enddo
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162 | endif
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163 | else
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164 | if(rep_id.eq.0.and.myrank.eq.0) then
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165 | open(13,file='par_R.in', status='unknown')
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166 | read(13,*) iold
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167 | do i=1,num_rep
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168 | read(13,*) j,inode(i),intem(i),yol(i),e_minp(i),h_maxp(i)
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169 | write (logString, *) "par_R.in:",i,j
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170 | end do
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171 | jold=(iold/nmes)*num_rep
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172 | rewind 14
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173 | do i=1,jold
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174 | read(14,*) idum1,idum2,idum3,dummy, dir
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175 | & ,dummy, dummy, dummy, dummy, dummy
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176 | & ,dummy, dummy, dummy, dummy
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177 | & ,dummy, idum1, idum2, idum3
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178 | & ,idum1, idum2, idum3, e_min
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179 | & ,dummy, dummy
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180 | write (logString, *) i
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181 | call flush(6)
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182 | end do
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183 | close(13)
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184 | end if
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185 | CALL MPI_BCAST(IOLD,1,MPI_INTEGER,0,MPI_COMM_WORLD,IERR)
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186 | CALL MPI_BCAST(INTEM,num_rep,MPI_INTEGER,0,MPI_COMM_WORLD,IERR)
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187 | CALL MPI_BCAST(INODE,num_rep,MPI_INTEGER,0,MPI_COMM_WORLD,IERR)
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188 | CALL MPI_BCAST(YOL,num_rep,MPI_DOUBLE_PRECISION,0,
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189 | & MPI_COMM_WORLD,IERR)
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190 | CALL MPI_BCAST(E_MINP, num_rep, MPI_DOUBLE_PRECISION, 0,
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191 | & MPI_COMM_WORLD, IERR)
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192 | CALL MPI_BCAST(h_maxp,num_rep,MPI_INTEGER,0,MPI_COMM_WORLD,
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193 | & IERR)
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194 | end if
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195 |
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196 | BETA = pbe(inode(rep_id+1))
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197 | e_min = e_minp(rep_id+1)
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198 | h_max = h_maxp(rep_id+1)
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199 | write (logString, *) "E_min=",e_min," for ", rep_id + 1
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200 | eol=energy()
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201 | if(.not.newsta.and.abs(yol(rep_id + 1) - eol).gt.0.1) then
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202 | write (logString, *) rep_id, ' Warning: yol(rep_id).ne.eol:'
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203 | write (logString, *) rep_id, yol(rep_id + 1), eol
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204 | endif
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205 | ! Start of simulation
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206 | write (logString, *) '[',rep_id, myrank, beta, partem_comm,
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207 | & '] Energy before equilibration:', eol
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208 | ! =====================Equilibration by canonical Metropolis
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209 | do nsw=1,nequi
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210 | call metropolis(eol,acz,can_weight)
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211 | end do
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212 | CALL MPI_BARRIER(MPI_COMM_WORLD,IERR)
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213 | write (logString, *) '[',rep_id,'] Energy after equilibration:',
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214 | & eol
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215 | call flush(6)
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216 | !
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217 | !======================Multiple Markov Chains
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218 | acz = 0
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219 | do nsw=1,nswp
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220 | !------------First ordinary Metropolis
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221 | call metropolis(eol,acz,can_weight)
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222 | iold = iold + 1
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223 | eol0 = eol
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224 | if (myrank.eq.0.and.rep_id.eq.0) then
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225 | write (logString, *) "Finished sweep", nsw
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226 | call flush(6)
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227 | endif
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228 | if(mod(iold,nmes).eq.0.and.myrank.eq.0) then
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229 | if ((rep_id + 1).eq.trackID.and.myrank.eq.0) then
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230 | frame = iold /nmes
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231 | filebase = "frame_00000.pdb"
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232 | call outpdb(0, fileNameMP(filebase, 7, 11, frame))
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233 | endif
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234 | acz0 = acz
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235 | ! Evaluate RMSD
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236 | nml = 1
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237 | rmsv = rmsdfun(nml,irsml1(nml),irsml2(nml),ixatp,xatp,yatp, &
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238 | & zatp,0)
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239 | ! print *,myrank,'received RMSD,energy ',rmsv,eyab,beta
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240 | ! Measure global radius of gyration
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241 | call rgyr(0,rgy,ee)
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242 | rgyp = rgy
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243 | ! Measure Helicity and Sheetness
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244 | call helix(nhel,mhel,nbet,mbet)
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245 | ! Measure Number of hydrogen bonds
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246 | mhb = 0
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247 | do i = 1, ntlml
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248 | call hbond(i,tmhb,-1)
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249 | mhb = mhb + 1
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250 | enddo
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251 | call interhbond(imhb)
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252 | ! Measure total number of contacts (NCTOT) and number of
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253 | ! native contacts (NCNAT)
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254 | call contacts(nctot,ncnat,dham)
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255 | ! Add tracking of lowest energy configuration
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256 | if (eol.lt.e_min) then
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257 | ! Write out configuration
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258 | i=rep_id+1
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259 | j=inode(i)
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260 | e_min = eol
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261 | filebase = "c_emin_0000.pdb"
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262 | call outpdb(0, fileNameMP(filebase, 8, 11, i))
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263 | filebase = "c_emin_0000.var"
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264 | call outvar(0, fileNameMP(filebase, 8, 11, i))
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265 | filebase = "c_emin_0000.dat"
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266 | open(15, file=fileNameMP(filebase, 8, 11, i),
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267 | & status="unknown")
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268 | ! write(15,'(i8,2i4,f6.2,2f8.2,5i8)') iold,i,j,pbe(i),
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269 | write(15,*) iold,j,i,beta,
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270 | & eol, eyab, eysl, eyel, eyvw, eyhb, eyvr, eysmi,asa,
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271 | & vdvol, rgy, nhel, nbet, mhb, imhb, nctot,ncnat
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272 | close(15)
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273 | endif
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274 | ! Add tracking of configuration with larges hydrogen contents.
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275 | if ((mhb + imhb).gt.h_max) then
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276 | ! Write out configuration
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277 | i = rep_id + 1
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278 | j = inode(i)
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279 | h_max = mhb + imhb
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280 | filebase = "c_hmax_0000.pdb"
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281 | call outpdb(0,fileNameMP(filebase,8,11,i))
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282 | filebase = "c_hmax_0000.var"
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283 | call outvar(0,fileNameMP(filebase,8,11,i))
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284 | filebase = "c_hmax_0000.dat"
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285 | open(15, file=fileNameMP(filebase, 8, 11, i),
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286 | & status="unknown")
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287 | ! write(15,'(i8,2i4,f6.2,2f8.2,5i8)') iold,i,j,pbe(i),
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288 | write(15,*) iold,j,i,beta,
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289 | & eol, eyab, eysl, eyel, eyvw, eyhb, eyvr, eysmi,asa,
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290 | & vdvol, rgy, nhel, nbet, mhb, imhb, nctot,ncnat
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291 | close(15)
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292 | endif
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293 |
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294 | !
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295 | !--------------------Gather measurement data
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296 | ! I only use the master node of each replica for data collection. The
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297 | ! variable partem_comm provides the appropriate communicator.
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298 | if (partem_comm.ne.MPI_COMM_NULL) then
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299 | CALL MPI_GATHER(rmsv,1,MPI_DOUBLE_PRECISION,rmsdp,1,
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300 | & MPI_DOUBLE_PRECISION, 0,partem_comm,IERR)
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301 | CALL MPI_GATHER(eyab,1,MPI_DOUBLE_PRECISION,eyabp,1,
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302 | & MPI_DOUBLE_PRECISION, 0,partem_comm,IERR)
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303 | CALL MPI_GATHER(RGYP,1,MPI_DOUBLE_PRECISION,RGYRP,1,
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304 | & MPI_DOUBLE_PRECISION, 0,partem_comm,IERR)
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305 | CALL MPI_GATHER(NHEL,1,MPI_INTEGER,NHELP,1,MPI_INTEGER,
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306 | & 0,partem_comm,IERR)
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307 | CALL MPI_GATHER(NBET,1,MPI_INTEGER,NBETP,1,MPI_INTEGER,
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308 | & 0,partem_comm,IERR)
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309 | CALL MPI_GATHER(MHB,1,MPI_INTEGER,MHBP,1,MPI_INTEGER,
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310 | & 0,partem_comm,IERR)
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311 | CALL MPI_GATHER(iMHB,1,MPI_INTEGER,iMHBP,1,MPI_INTEGER,
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312 | & 0,partem_comm,IERR)
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313 | CALL MPI_GATHER(NCTOT,1,MPI_INTEGER,NCTOTP,1,MPI_INTEGER,
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314 | & 0,partem_comm,IERR)
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315 | CALL MPI_GATHER(NCNAT,1,MPI_INTEGER,NCNATP,1,MPI_INTEGER,
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316 | & 0,partem_comm,IERR)
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317 | CALL MPI_GATHER(dir,1,MPI_INTEGER,dirp,1,MPI_INTEGER,
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318 | & 0,partem_comm,IERR)
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319 | CALL MPI_GATHER(acz0,1,MPI_DOUBLE_PRECISION,acy1,1,
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320 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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321 | CALL MPI_GATHER(e_min,1,MPI_DOUBLE_PRECISION,e_minp,1,
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322 | & MPI_DOUBLE_PRECISION,0, partem_comm,IERR)
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323 | CALL MPI_GATHER(EOL0,1,MPI_DOUBLE_PRECISION,YOL,1,
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324 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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325 | CALL MPI_GATHER(eysl,1,MPI_DOUBLE_PRECISION,eyslr,1,
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326 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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327 | CALL MPI_GATHER(eyel,1,MPI_DOUBLE_PRECISION,eyelp,1,
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328 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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329 | CALL MPI_GATHER(eyvw,1,MPI_DOUBLE_PRECISION,eyvwp,1,
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330 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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331 | CALL MPI_GATHER(eyhb,1,MPI_DOUBLE_PRECISION,eyhbp,1,
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332 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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333 | CALL MPI_GATHER(eyvr,1,MPI_DOUBLE_PRECISION,eyvrp,1,
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334 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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335 | CALL MPI_GATHER(eysmi,1,MPI_DOUBLE_PRECISION,eysmip,1,
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336 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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337 | CALL MPI_GATHER(asa,1,MPI_DOUBLE_PRECISION,asa_p,1,
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338 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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339 | CALL MPI_GATHER(vdvol,1,MPI_DOUBLE_PRECISION,vdvolp,1,
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340 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
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341 |
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342 | ! CALL MPI_GATHER(EOL0,1,MPI_DOUBLE_PRECISION,YOL,1,MPI_DOUBLE_PRECISION,
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343 | ! & 0,MPI_COMM_WORLD,IERR)
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344 | ! CALL MPI_GATHER(E_MIN, 1, MPI_DOUBLE_PRECISION, E_MINP, MPI_DOUBLE_PRECISION,
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345 | ! & 0,MPI_COMM_WORLD, IERR)
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346 |
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347 | ! Write trajectory
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348 | write (18,*) '@@@',iold,inode(rep_id+1)
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349 | call outvbs(0,18)
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350 | write (18,*) '###'
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351 | ! call flush(18)
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352 | ! Write current configuration
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353 | if ((mod(iold, nsave).eq.0)) then
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354 | filebase = "conf_0000.var"
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355 | call outvar(0, fileNameMP(filebase, 6, 9, rep_id+1))
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356 | endif
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357 | endif
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358 |
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359 | if(rep_id.eq.0.and.myrank.eq.0) then
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360 | randomCount = 0
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361 | ! Update acceptance, temperature wise average of E and E^2 used to calculate
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362 | ! specific heat.
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363 | do i=1,num_rep
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364 | j=intem(i)
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365 | acy(i)=0.0
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366 | ! Above: contents of acy1 are added to acy(i) a few lines down.
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367 | ! acy1(intem(i)) contains information received from the node at temperature
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368 | ! i, on how many updates have been accepted in node intem(i). Since acz
|
---|
369 | ! is not reset to 0 every cycle, acy(i) must be set to 0 here. Else, there
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370 | ! will be serious double counting and the values of acceptance printed
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---|
371 | ! will be simply wrong.
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---|
372 | end do
|
---|
373 | do i=1, num_rep
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374 | j=intem(i)
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375 | acy(i)=acy(i)+acy1(j)
|
---|
376 | eavm(i)= eavm(i)+yol(j)
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---|
377 | sph(i) = sph(i)+yol(j)*yol(j)
|
---|
378 | enddo
|
---|
379 |
|
---|
380 |
|
---|
381 | ! Write measurements to the time series file ts.d
|
---|
382 | do i=1,num_rep
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---|
383 | j=intem(i)
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---|
384 | write(14,*) iold,i,j,pbe(i), dirp(j),
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385 | & yol(j),eyslr(j), eyelp(j), eyvwp(j), eyhbp(j),
|
---|
386 | & eyvrp(j),eysmip(j), asa_p(j), vdvolp(j),
|
---|
387 | & rgyrp(j),nhelp(j),nbetp(j),mhbp(j),
|
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388 | & imhbp(j), nctotp(j),ncnatp(j), e_minp(j),
|
---|
389 | & eyabp(j),rmsdp(j)
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390 | ! call flush(14)
|
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391 | end do
|
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392 | ! Write the current parallel tempering information into par_R.in
|
---|
393 | ! timeLeft = llwrem(2) ! Time left till hard limit
|
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394 | ! if ((mod(iold, nsave).eq.0).or.(timeLeft.lt.minTimeLeft)
|
---|
395 | if ((mod(iold, nsave).eq.0))
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---|
396 | & then
|
---|
397 | open(13,file='par_R.in', status='unknown')
|
---|
398 | write(13,*) iold
|
---|
399 | do i=1,num_rep
|
---|
400 | write(13,*) i,inode(i),intem(i),yol(i),e_minp(i),
|
---|
401 | & h_maxp(i)
|
---|
402 | end do
|
---|
403 | ! -------------------------- Various statistics of current run
|
---|
404 | ! swp=nswp-nequi
|
---|
405 | swp=nsw
|
---|
406 | write(13,*) 'Acceptance rate for change of chains:'
|
---|
407 | do k1=1,num_rep
|
---|
408 | temp=1.0d0/pbe(k1)/0.00198773
|
---|
409 | write(13,*) temp, acx1(k1)*2.0d0*nmes/swp
|
---|
410 | ! Above: it's the acceptance rate of exchange of replicas. Since a
|
---|
411 | ! replica exchange is attempted only once every nmes sweeps, the
|
---|
412 | ! rate should be normalized with (nmes/swp).
|
---|
413 | end do
|
---|
414 | write(13,*)
|
---|
415 | do k1=1,num_rep
|
---|
416 | k = intem(k1)
|
---|
417 | temp=1.0d0/pbe(k1)/0.00198773
|
---|
418 | beta = pbe(k1)
|
---|
419 | geavm(k1) = nmes*eavm(k1)/swp
|
---|
420 | gsph(k1) = (nmes*sph(k1)/swp-geavm(k1)**2)
|
---|
421 | & *beta*beta/nresi
|
---|
422 | write(13,'(a,2f9.2,i4,f12.3)')
|
---|
423 | & 'Temperature, Node,local acceptance rate:',
|
---|
424 | & beta,temp,k,acy(k1)/dble(nsw*nvr)
|
---|
425 | ! Above: Changed (nswp-nequi) in the denominator of acceptance as
|
---|
426 | ! acceptance values are initialized to 0 after equilibration cycles are
|
---|
427 | ! finished. Note also that since this is being written in the middle of
|
---|
428 | ! the simulation, it is normalized to nsw instead of nswp.
|
---|
429 | write(13,'(a,3f12.2)')
|
---|
430 | & 'Last Energy, Average Energy, Spec. Heat:',
|
---|
431 | & yol(k),geavm(k1),gsph(k1)
|
---|
432 | write(13,*)
|
---|
433 | end do
|
---|
434 | close(13)
|
---|
435 | ! Finally, flush the time series and trajectory files to ensure that we can do
|
---|
436 | ! a proper restart.
|
---|
437 | call flush(14)
|
---|
438 | call flush(18)
|
---|
439 | end if
|
---|
440 |
|
---|
441 | !--------------------Parallel Tempering update
|
---|
442 | ! Swap with right neighbor (odd, even)
|
---|
443 | if(odd.eq.1) then
|
---|
444 | nu=1
|
---|
445 | no1 = num_rep-1
|
---|
446 | ! Swap with left neighbor (even, odd)
|
---|
447 | else
|
---|
448 | nu = 2
|
---|
449 | no1 = num_rep
|
---|
450 | end if
|
---|
451 | do i=nu,no1,2
|
---|
452 | j=i+1
|
---|
453 | ! Periodic bc for swaps
|
---|
454 | if(i.eq.num_rep) j=1
|
---|
455 | in=intem(i)
|
---|
456 | jn=intem(j)
|
---|
457 | wij=exp(-pbe(i)*yol(jn)-pbe(j)*yol(in)
|
---|
458 | & +pbe(i)*yol(in)+pbe(j)*yol(jn))
|
---|
459 | ! The random number generator is getting out of sync here, because
|
---|
460 | ! the swap is only done on node 0!
|
---|
461 | ! Keep track of number of random numbers used.
|
---|
462 | rd=grnd()
|
---|
463 | randomCount = randomCount + 1
|
---|
464 | ! write (16,*) '>', iold, i,j
|
---|
465 | ! & ,pbe(i),yol(in), pbe(j), yol(jn), wij, rd
|
---|
466 | if(wij.ge.rd) then
|
---|
467 | ! Next line: Replica exchange only happens after equilibration,
|
---|
468 | ! which takes place outside this loop over nsw. So, I think nsw.gt.nequi
|
---|
469 | ! is irrelevant for the calculation of acceptance of replica exchanges.
|
---|
470 | ! /Sandipan
|
---|
471 | ! if(nsw.gt.nequi)
|
---|
472 | acx1(i) = acx1(i)+1
|
---|
473 | intem(i) = jn
|
---|
474 | intem(j) = in
|
---|
475 | inode(in)= j
|
---|
476 | inode(jn)= i
|
---|
477 | end if
|
---|
478 | end do
|
---|
479 | ! ---------------- End Loop over nodes which creates a new temperature
|
---|
480 | ! map for all nodes, at the node with rank 0.
|
---|
481 | !
|
---|
482 | odd = 1 - odd
|
---|
483 | end if
|
---|
484 | ! End of "if (myrank.eq.0) ...". The block above includes PT update and
|
---|
485 | ! writing of observables into the time series file etc.
|
---|
486 |
|
---|
487 | ! Below: Communicate new temperature-node map to all nodes
|
---|
488 | CALL MPI_BCAST(INTEM,num_rep,MPI_INTEGER,0,MPI_COMM_WORLD,
|
---|
489 | & IERR)
|
---|
490 | CALL MPI_BCAST(INODE,num_rep,MPI_INTEGER,0,MPI_COMM_WORLD,
|
---|
491 | & IERR)
|
---|
492 | ! Synchronize random number generators for replica 0
|
---|
493 | if (rep_id.eq.0) then
|
---|
494 | CALL MPI_BCAST(randomCount,1,MPI_INTEGER,0,my_mpi_comm,
|
---|
495 | & IERR)
|
---|
496 | if (myrank.ne.0) then
|
---|
497 | ! write (logString, *) '[', myrank,'] Missed', randomCount,
|
---|
498 | ! & 'random numbers.'
|
---|
499 | do i = 1, randomCount
|
---|
500 | rd = grnd()
|
---|
501 | ! write (logString, *) '[', myrank,'] rd=', rd
|
---|
502 | enddo
|
---|
503 | endif
|
---|
504 | endif
|
---|
505 |
|
---|
506 | BETA=PBE(INODE(rep_id+1))
|
---|
507 | if (INODE(rep_id + 1).eq.1) dir = 1
|
---|
508 | if (INODE(rep_id + 1).eq.num_rep) dir = -1
|
---|
509 |
|
---|
510 | endif
|
---|
511 | ! End of "if (mod(iold,nmes).eq.0) ..."
|
---|
512 | end do
|
---|
513 | !-----------End Loop over sweeps
|
---|
514 | !
|
---|
515 | ! OUTPUT:
|
---|
516 | !--------------------For Re-starts:
|
---|
517 | nu = rep_id + 1
|
---|
518 | filebase = "conf_0000.var"
|
---|
519 | call outvar(0, fileNameMP(filebase, 6, 9, nu))
|
---|
520 | e_final=energy()
|
---|
521 | if (partem_comm.ne.MPI_COMM_NULL) then
|
---|
522 | write (logString, *) rep_id, ' E_final', e_final
|
---|
523 | endif
|
---|
524 | eol0 = eol
|
---|
525 | acz0 = acz
|
---|
526 | if (partem_comm.ne.MPI_COMM_NULL) then
|
---|
527 | CALL MPI_GATHER(EOL0,1,MPI_DOUBLE_PRECISION,YOL,1,
|
---|
528 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
|
---|
529 | CALL MPI_GATHER(acz0,1,MPI_DOUBLE_PRECISION,acy1,1,
|
---|
530 | & MPI_DOUBLE_PRECISION,0,partem_comm,IERR)
|
---|
531 | endif
|
---|
532 |
|
---|
533 | if(rep_id.eq.0.and.myrank.eq.0) then
|
---|
534 | close(14)
|
---|
535 | open(13,file='par_R.in', status='unknown')
|
---|
536 | write(13,*) iold
|
---|
537 | do i=1,num_rep
|
---|
538 | write(13,*) i,inode(i),intem(i),yol(i),e_minp(i),h_maxp(i)
|
---|
539 | end do
|
---|
540 | ! -------------------------- Various statistics of current run
|
---|
541 | swp=nswp
|
---|
542 | write(13,*) 'Acceptance rate for change of chains:'
|
---|
543 | do k1=1,num_rep
|
---|
544 | temp=1.0d0/pbe(k1)/0.00198773
|
---|
545 | write(13,*) temp, acx1(k1)*2.0d0*nmes/swp
|
---|
546 | end do
|
---|
547 | write(13,*)
|
---|
548 | do k1=1,num_rep
|
---|
549 | k = intem(k1)
|
---|
550 | temp=1.0d0/pbe(k1)/0.00198773
|
---|
551 | beta = pbe(k1)
|
---|
552 | geavm(k1) = nmes*eavm(k1)/swp
|
---|
553 | gsph(k1) = (nmes*sph(k1)/swp-geavm(k1)**2)*beta*beta/nresi
|
---|
554 | write(13,'(a,2f9.2,i4,f12.3)')
|
---|
555 | & 'Temperature, Node,local acceptance rate:',
|
---|
556 | & beta,temp,k,acy(k1)/dble((nswp)*nvr)
|
---|
557 | write(13,'(a,3f12.2)')
|
---|
558 | & 'Last Energy, Average Energy, Spec. Heat:',
|
---|
559 | & yol(k),geavm(k1),gsph(k1)
|
---|
560 | write(13,*)
|
---|
561 | end do
|
---|
562 | close(13)
|
---|
563 | ! close(16)
|
---|
564 | end if
|
---|
565 | close(18)
|
---|
566 |
|
---|
567 | ! =====================
|
---|
568 | CALL MPI_BARRIER(MPI_COMM_WORLD,IERR)
|
---|
569 |
|
---|
570 | return
|
---|
571 |
|
---|
572 | end
|
---|