index
pySMMP: Python bindings to SMMP v. 1.1.
index
sec_tutorial
algorithms.py
/home/meinke/research/software/SMMP/SMMP-3.0/
algorithms_8py
algorithms
math
algorithms::CanonicalMonteCarlo
main.py
/home/meinke/research/software/SMMP/SMMP-3.0/
main_8py
main
string
usage
namespacemain.html
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tuple
parser
namespacemain.html
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string
help
namespacemain.html
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string
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string
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namespacemain.html
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string
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string
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string
help
namespacemain.html
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list
seqFileName
namespacemain.html
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tuple
myUniv
namespacemain.html
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tuple
p1
namespacemain.html
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float
T
namespacemain.html
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tuple
ts
namespacemain.html
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tuple
t1
namespacemain.html
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tuple
te
namespacemain.html
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protein.py
/home/meinke/research/software/SMMP/SMMP-3.0/
protein_8py
protein
protein::Atom
protein::Residue
protein::Protein
def
nursvr
namespaceprotein.html
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float
crd
namespaceprotein.html
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string
libdir
namespaceprotein.html
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tuple
p1
namespaceprotein.html
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restoreexclpoint.py
/home/meinke/research/software/SMMP/SMMP-3.0/
restoreexclpoint_8py
restoreexclpoint
rmexclpoint.py
/home/meinke/research/software/SMMP/SMMP-3.0/
rmexclpoint_8py
rmexclpoint
string
patternstring
namespacermexclpoint.html
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string
patternstring2
namespacermexclpoint.html
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string
patternstring3
namespacermexclpoint.html
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pattern
namespacermexclpoint.html
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pattern3
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f
namespacermexclpoint.html
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tuple
s
namespacermexclpoint.html
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tuple
t
namespacermexclpoint.html
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tuple
t
namespacermexclpoint.html
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tuple
t
namespacermexclpoint.html
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tuple
f
namespacermexclpoint.html
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test.py
/home/meinke/research/software/SMMP/SMMP-3.0/
test_8py
test
smmp
random
time
string
libdir
namespacetest.html
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string
grpn
namespacetest.html
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string
grpc
namespacetest.html
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int
nequi
namespacetest.html
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int
nswp
namespacetest.html
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nmes
namespacetest.html
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int
Tmax
namespacetest.html
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int
Tmin
namespacetest.html
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int
T
namespacetest.html
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tuple
timeseries
namespacetest.html
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int
iabin
namespacetest.html
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tuple
eol
namespacetest.html
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int
acc
namespacetest.html
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universe.py
/home/meinke/research/software/SMMP/SMMP-3.0/
universe_8py
universe
universe::Universe
algorithms
namespacealgorithms.html
algorithms::CanonicalMonteCarlo
algorithms::CanonicalMonteCarlo
classalgorithms_1_1CanonicalMonteCarlo.html
def
__init__
classalgorithms_1_1CanonicalMonteCarlo.html
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def
acceptanceRate
classalgorithms_1_1CanonicalMonteCarlo.html
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def
minimumEnergy
classalgorithms_1_1CanonicalMonteCarlo.html
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def
performedSweeps
classalgorithms_1_1CanonicalMonteCarlo.html
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def
run
classalgorithms_1_1CanonicalMonteCarlo.html
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def
equilibrate
classalgorithms_1_1CanonicalMonteCarlo.html
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def
sweeps
classalgorithms_1_1CanonicalMonteCarlo.html
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def
sweep
classalgorithms_1_1CanonicalMonteCarlo.html
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def
metropolis
classalgorithms_1_1CanonicalMonteCarlo.html
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__defSweeps
classalgorithms_1_1CanonicalMonteCarlo.html
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__defEqui
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__univ
classalgorithms_1_1CanonicalMonteCarlo.html
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__acc
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__performedSweeps
classalgorithms_1_1CanonicalMonteCarlo.html
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__minEnergy
classalgorithms_1_1CanonicalMonteCarlo.html
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__l
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__minCounter
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__weight
classalgorithms_1_1CanonicalMonteCarlo.html
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main
namespacemain.html
string
usage
namespacemain.html
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tuple
parser
namespacemain.html
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help
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string
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list
seqFileName
namespacemain.html
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tuple
myUniv
namespacemain.html
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tuple
p1
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float
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ts
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tuple
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namespacemain.html
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math
namespacemath.html
protein
namespaceprotein.html
protein::Atom
protein::Residue
protein::Protein
def
nursvr
namespaceprotein.html
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float
crd
namespaceprotein.html
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string
libdir
namespaceprotein.html
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tuple
p1
namespaceprotein.html
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protein::Atom
classprotein_1_1Atom.html
def
__init__
classprotein_1_1Atom.html
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def
position
classprotein_1_1Atom.html
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def
charge
classprotein_1_1Atom.html
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def
radius
classprotein_1_1Atom.html
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def
name
classprotein_1_1Atom.html
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def
__str__
classprotein_1_1Atom.html
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__id
classprotein_1_1Atom.html
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protein::Residue
classprotein_1_1Residue.html
def
__init__
classprotein_1_1Residue.html
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def
atoms
classprotein_1_1Residue.html
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__id
classprotein_1_1Residue.html
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protein::Protein
classprotein_1_1Protein.html
def
__init__
classprotein_1_1Protein.html
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def
setOrigin
classprotein_1_1Protein.html
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def
origin
classprotein_1_1Protein.html
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def
getDihedral
classprotein_1_1Protein.html
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def
findResidue
classprotein_1_1Protein.html
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def
atoms
classprotein_1_1Protein.html
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def
residues
classprotein_1_1Protein.html
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def
id
classprotein_1_1Protein.html
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def
strand
classprotein_1_1Protein.html
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def
directionVector
classprotein_1_1Protein.html
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def
contacts
classprotein_1_1Protein.html
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def
hbond
classprotein_1_1Protein.html
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def
energy
classprotein_1_1Protein.html
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def
rgyr
classprotein_1_1Protein.html
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def
rmsdfun
classprotein_1_1Protein.html
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def
savePDB
classprotein_1_1Protein.html
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def
saveVariables
classprotein_1_1Protein.html
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def
zimmer
classprotein_1_1Protein.html
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def
__len__
classprotein_1_1Protein.html
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__id
classprotein_1_1Protein.html
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random
namespacerandom.html
restoreexclpoint
namespacerestoreexclpoint.html
rmexclpoint
namespacermexclpoint.html
string
patternstring
namespacermexclpoint.html
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string
patternstring2
namespacermexclpoint.html
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patternstring3
namespacermexclpoint.html
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pattern
namespacermexclpoint.html
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pattern2
namespacermexclpoint.html
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pattern3
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f
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s
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f
namespacermexclpoint.html
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smmp
namespacesmmp.html
test
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string
libdir
namespacetest.html
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grpn
namespacetest.html
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grpc
namespacetest.html
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nswp
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nmes
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acc
namespacetest.html
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time
namespacetime.html
universe
namespaceuniverse.html
universe::Universe
universe::Universe
classuniverse_1_1Universe.html
def
__init__
classuniverse_1_1Universe.html
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def
add
classuniverse_1_1Universe.html
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def
energy
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def
rgyr
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def
endToEnd
classuniverse_1_1Universe.html
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def
hbond
classuniverse_1_1Universe.html
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def
helix
classuniverse_1_1Universe.html
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sheet
classuniverse_1_1Universe.html
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temperature
classuniverse_1_1Universe.html
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def
setTemperature
classuniverse_1_1Universe.html
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boxSize
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objects
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save
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